Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs10914350 chr1:31784671 C/A 0.00011 491 23.57 31.33 30.8 KM Plot
PRAD rs10914367 chr1:31846206 A/G 8.25E-6 494 22.87 31.3 30.87 KM Plot
PRAD rs10920461 chr1:202687707 C/T 0.000125 494 31.07 30.2 28.23 KM Plot
PRAD rs10927882 chr1:16327229 T/C 2.29E-5 494 31.38 27.13 67.52 KM Plot
PRAD rs10929270 chr2:239105774 T/A 5.94E-9 476 32.03 28.93 32.23 KM Plot
PRAD rs10930817 chr2:178782739 A/G 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs10932035 chr2:204824652 G/A 2.95E-5 491 30.8 32.4 20.33 KM Plot
PRAD rs10932036 chr2:204825181 A/T 2.88E-5 494 30.8 31.63 20.33 KM Plot
PRAD rs10932037 chr2:204825346 C/T 2.89E-5 493 30.87 31.63 20.33 KM Plot
PRAD rs10932038 chr2:204825584 C/T 5.1E-5 494 17.65 31.4 30.93 KM Plot
PRAD rs11017046 chr10:131801825 C/T 2.53E-5 489 31.87 29.13 27.58 KM Plot
PRAD rs11017047 chr10:131801955 C/A 2.53E-5 489 31.87 29.13 27.58 KM Plot
PRAD rs11017048 chr10:131803392 A/T 5.13E-5 494 26.12 28.88 32.27 KM Plot
PRAD rs11020593 chr11:93649416 A/C 8.06E-5 485 31.4 30.93 26.37 KM Plot
PRAD rs11036231 chr11:1632108 G/T 0.000116 494 18.55 31 31.23 KM Plot